Sentinel 5.17.5 User Guide|
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| Sentinel 5.17.5 User Guide |
Users with the Manage Lab Mappings permission can manage observation mapping and specimen mapping. The Lab Observation Mapping Management page displays the test code system, test code, test description, result code system, result code and description, disease name, LOINC test code, and SNOMED result code mappings.
The lab observation mapping versioning feature can be enabled only after the migration from the Sentinel 5.17.2 version to Sentinel 5.17.5 version. Once the versioning feature is enabled, you cannot go back to the previous version of Sentinel.
To configure lab observation mappings, click the ELR - CDC Reporting > Lab Observation Mapping Management menu link. The Lab Observation Mapping Management page opens. Select a mapping name from the Select a Mapping to Edit drop-down list. The information for the mapping displays on the page and the versions that are available for the mapping table appears in the Version drop-down list (located on the right side of the selected mapping). You can create a new mapping version by copying an existing version. The version numbers cannot be skipped or repeated; they should be in sequence. You can set any version as the primary version of the mapping. The primary version is the version that is used in the facility management for lab observation mapping. The list can be sorted by clicking on the column header. Under the list of current mappings, the number of mappings displayed on the page is listed (for example, Showing 1 to 2 of 2 entries) and on the right side of that line are previous and forward arrows; click the arrows as needed to display additional mappings.
To add a new mapping table, click the New Mapping Table button on the Lab Observation Mapping Management page. See the Add a New Mapping Table section below for more information.
To add a new entry, either click the New Entry button or select Import Mapping Table from the drop-down arrow button, depending on your method of adding information. See the Add/Import New Entry section below for more information.
The following actions can be performed from the drop-down arrow button
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| Field/Option/Button | Description |
| (drop-down arrow button)
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Select one of the following options to perform an action:
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The columns and options on the Lab Observation Mapping Management page are as follows:
| Column/Option | Description |
| Show ___ entries | Select from the drop-down list the number of entries to display on the page: All, 10, 25, 50 or 100. |
| Search | Enter a few characters of the test code, test description, result code system, result description, disease name, LOINC test code, or SNOMED result code in the Search field. The list automatically filters based on what is entered in the field. |
| Test Code System | The name of the lab test coding system used for the lab test. Example: LN - LOINC Code, L - Local Code. |
| Test Code | The lab test code of the completed test. It can be a LOINC number, a local code, or text. |
| Test Description | The laboratory test description. |
| Result Code System | The result code of the reported test name. It can be a SNOMED code, SNOMED ID, or text. |
| Result Code | The result code of the reported test name. |
| Result Description | The description of a reported observation. |
| Disease Name | The name of the disease. |
| LOINC Test Code | The LOINC test code associated with the lab test code. |
| SNOMED Result Code | The SNOMED result code associated with the lab result code. |
| Edit | This button is displayed when you select a mapping name from the Select a Mapping to Edit drop-down list. Click this button to edit the lab observation mapping entry. See Edit a Lab Observation Mapping Entry. |
| Delete | This button is displayed when you select a mapping name from the Select a Mapping to Edit drop-down list. Click this button to delete the entry and then select Yes or No to confirm. |
To add a new mapping table, first select ELR - CDC Reporting > Lab Observation Mapping Management from the menu, then click the New Mapping Table button on the Lab Observation Mapping Management page. The New Mapping Table pop-up window opens. Enter at least the required fields (in red text) and click Add. To cancel without saving any changes, click Cancel.
The fields and options on the New Mapping Table pop-up window are as follows:
| Field | Description |
| Mapping Name | Enter the name of the new mapping. This field is required. |
| Import mappings from (Optional) | Select the mapping name you want to import from the drop-down list. |
There are two ways to add one or more lab observation mapping entries to the application. The first is to add them manually; the second is to import a file containing lab observation information. For either method, go to the Lab Observation Mapping Management page by selecting ELR - CDC Reporting > Lab Observation Mapping Management from the menu, then selecting a mapping name from the Select a Mapping to Edit drop-down list.
To manually add a new lab observation mapping entry, select ELR - CDC Reporting > Lab Observation Mapping Management from the menu, select a mapping name from the Select a Mapping to Edit drop-down list, and then click the New Entry button on the Lab Observation Mapping Management page. The Add Lab Observation Mapping Entry pop-up window opens. Enter at least the required fields (in red text) and click Add.
The available fields and options on the Add Lab Observation Mapping Entry pop-up window are as follows:
| Field/Option | Description |
| Test Code System | Enter the name of the lab test coding system used for the lab test. Example: LN - LOINC Code, L - Local Code. This field is required. |
| Test Code | Enter the lab test code of the test done. It can be a LOINC number, a local code, or text. This field is required. |
| Test Description | Enter the electronic laboratory test description. |
| Result Code System | Enter the lab result coding system used to obtain the lab result. Example: LN - LOINC Code, SNM - SNOMED Code, L - Local Code. This field is required. |
| Result Code | Enter the result code of the reported test name. It can be a SNOMED code or SNOMED ID, or text. This field is required. |
| Result Description | Enter the description of a reported test observation. |
| LOINC Test Code | Enter the LOINC test code associated with the lab test code. |
| SNOMED Result Code | Enter the SNOMED result code associated with the lab result code. |
| Specimen Source | Select the origin of the specimen/sample from the drop-down list. Examples: Abscess, Amniotic fluid, Aspirate, Biopsy/Tissue, etc. |
| Organism Name | Select the name of the organism from the drop-down list. |
| Organism Species | Select the organism species from the drop-down list. The fundamental category of taxonomic classification, ranking below a genus or subgenus and consisting of related organisms capable of interbreeding. Example: For Herpes simplex, Herpes is the genus name and Herpes simplex describes a species (or category) of Herpes virus. |
| Organism Serogroup | Select this option when an organism may have a serogroup designation. |
| Organism Serotype | Select this option when an organism may have serotype designation. |
| Disease Name | Select the disease's name from the drop-down list. This field is required. |
To import a lab observation mapping entry, first make sure the CSV file has the information in the correct field order and that the fields are separated by commas. Select the Import Mapping Table option from the drop-down arrow button. The Import pop-up window opens. Click Choose File, navigate to the CSV file, and select it. An error message displays at the top of the page if the CSV file is not successfully imported.
To edit a lab observation mapping entry, first select ELR - CDC Reporting > Lab Observation Mapping Management from the menu, select a mapping name from the Select a Mapping to Edit drop-down list, and then search for the entry and/or locate the entry in the list of lab observation mappings. Click the Edit button for the entry in the list. The Edit Lab Observation Mapping Entry pop-up window opens with the details pre-populated in the fields. Make any necessary changes and click Update when finished. To cancel without saving any changes, click Cancel.
The available fields and options on the Edit Lab Observation Mapping entry pop-up window are as follows:
| Field/Option | Description |
| Test Code System | The name of the lab test coding system used for the lab test. Example: LN - LOINC Code, L - Local Code. This field is required. |
| Test Code | The lab test code of the test done. It can be a LOINC number, a local code, or text. This field is required. |
| Test Description | The electronic laboratory test description. |
| Result Code System | The lab result coding system used to obtain the lab result. Example: LN - LOINC Code, SNM - SNOMED Code, L - Local Code. This field is required. |
| Result Code | The result code of the reported test name. This field is required. |
| Result Description | The description of a reported test observation. |
| LOINC Test Code | The LOINC test code associated with the lab test code. |
| SNOMED Result Code | The SNOMED result code associated with the lab result code. |
| Specimen Source | Select the origin of the specimen/sample from the drop-down list. Examples: Abscess, Amniotic fluid, Aspirate, Biopsy/Tissue, etc. |
| Organism Name | Select the name of the organism from the drop-down list. |
| Organism Species | Select the organism species from the drop-down list. The fundamental category of taxonomic classification, ranking below a genus or subgenus and consisting of related organisms capable of interbreeding. Example: For Herpes simplex, Herpes is the genus name and Herpes simplex describes a species (or category) of Herpes virus. |
| Organism Serogroup | Select this option when an organism may have a serogroup designation. |
| Organism Serotype | Select this option when an organism may have serotype designation. |
| Disease Name | Select the disease's name from the drop-down list. This field is required. |